Classification of Enzymes with Examples : The 7 types of enzymes
Classification of Enzymes in Details:
- To study enzymes with different properties and functions, a systematic and effective classification method is necessary.
- Although the molecular composition and cellular localization of enzymes can be used as a basis for classification.
- For functional research, it is more important to classify enzymes according to the type of reaction they catalyze.
- In 1961, the International Union of Biochemistry and Molecular Biology (IUBMB) grouped all enzymes into six categories according to the type of reaction they catalyze.
- In August 2018, the classification of translocases was added, so there are now seven major enzymes, namely: oxidase-reductase (EC 1), transferase (EC 2), hydrolase (EC 3), lyase (EC 4), isomerase (EC 5), ligase (EC 6) and translocase (EC 7). Wherein EC stands for Enzyme Commission.
- In these seven major enzyme classes (class), each is divided into several subclasses (subclass), and subclasses are divided into sub-subclasses (sub-subclass).
- The classification criteria of subclasses are different according to the characteristics of each type of reaction.
1. Oxidoreductases (EC 1):
- These enzymes catalyze oxidation-reduction reactions.
- According to the principle of systematic classification enzymes oxidoreductases are divided into 24 subclasses according to the type of electron donor (substrate) and the sub-subclasses are divided according to the electron acceptor.
- The coenzymes of this class are NAD, NADP, FAD, FMN, ubiquinone, glutathione, and lipoic acid.
- Oxidoreductase enzymes help in energy production, detoxification, and other functions that are extremely important to living organisms.
Subclasses of Oxido-reductases Enzymes:
If we consider all subclasses, then groups of enzymes acting on are :
- 1.1. CH-OH donor group;
- 1.2. aldehyde or ketone group of donors;
- 1.3. CH-CH group of donors;
- 1.4. CH-NH 2 donor group;
- 1.5. CH-NH donor group;
- 1.6. NADH or NADPH as donors;
- 1.8. containing sulfur groups of donors;
- 1.9. heme-containing donors;
- 1.10. diphenols as donors;
- 1.11. hydrogen peroxide as an acceptor;
- 1.11. hydrogen as a donor;
- 1.13. one donor with the inclusion of molecular oxygen;
- 1.14. two donors with the inclusion of molecular oxygen;
- 1.15. superoxide radicals as an acceptor;
- 1.17. CH 2 group of donors;
- 1.18. ferredoxin as a donor;
- 1.19. flavodoxin as a donor;
- 1.20. phosphorus or arsenic as a donor;
- 1.21. on substances X-H and Y-H with the formation of an XY-bond;
- 1.22. halogen as a donor;
- 1.97. other oxidoreductases
Examples of Oxido-reductases Enzymes:
The most common names for oxidoreductase enzymes are:
- Oxidases: are oxidoreductases that catalyze the oxidation of substrates with molecular oxygen as an electron acceptor without incorporating oxygen into the substrate molecule.
- Dehydrogenases: are oxidoreductases that catalyze the dehydrogenation of a substrate using any molecules other than oxygen as a hydrogen acceptor. For example, alcohol dehydrogenase has an EC number of 1.1.1.1. – it is an oxidoreductase that acts on the OH group of the donor with NAD as an acceptor with the first serial number in its subclass; lactate dehydrogenase – EC 1.1.1.27, acts on the OH group of the donor with NAD as an acceptor with serial number 27 in its subclass.
- Reductases: If the transfer of hydrogen from a donor molecule is difficult to prove, then such oxidoreductases are called reductases.
- Peroxidases are oxidoreductases that catalyze reactions with hydrogen peroxide as an electron acceptor.
- Monooxygenases: are oxidoreductases that catalyze the introduction of one oxygen atom into a substrate molecule with molecular oxygen as an oxygen donor.
- Dioxygenases: are oxidoreductases that catalyze the introduction of 2 oxygen atoms into a substrate molecule with molecular oxygen as an oxygen donor.
2. Transferase (EC 2):
- Transferases catalyze the reactions of the transfer of various functional groups from one substrate (donor) to another (acceptor).
- These enzymes take place in the interconversion of various substances, neutralizing natural and foreign compounds.
- The coenzymes of transferases are pyridoxal phosphate, coenzyme A, tetrahydrofolic acid, and methylcobalamin.
- The class is subdivided into 9 subclasses depending on the structure of the transferred groups.
Subclasses of Transferases Enzymes:
If we consider all subclasses, then groups of enzymes are distinguished in them depending on the composition of the transferred group
- 2.1. transferring one-carbon fragments;
- 2.2. carrying aldehyde and keto groups;
- 2.3. carrying acyl groups;
- 2.4. carrying glycosyl groups;
- 2.5. carrying non-methyl alkyl and aryl groups;
- 2.6. transferring nitrogen-containing groups;
- 2.7. carrying phosphorus-containing groups.
- 2.8. transferring sulfonic groups;
- 2.9. carrying selenium-containing groups.
Examples of Transferases Enzymes:
- Carbonyltransferases (EC 2.1): Transfer of one-carbon units, such as methyltransferases involved in the methylation of nucleic acids and proteins. Carboxyltransferases belong to this subclass, such as methylmalonyl-CoA carboxyltransferases (EC 2.1.3.1).
- Glycosyltransferase (EC 2.4): closely related to carbohydrate metabolisms, such as glycogen synthase (2.4.1.11), and glycogen phosphorylase (2.4.1.1).
- Phosphotransferases (EC 2.7): Often called kinases, mostly use ATP as a donor. For example, hexokinase, protein tyrosine kinase, etc. It is important to note that a few proteases are also called kinases (eg enterokinase), but they are hydrolases.
- Hydrolases are the class of enzymes that break intramolecular bonds in the substrate by adding H2O elements.
- Hydrolases are divided into 13 subclasses.
- Due to the complexity of many substrates, several enzymes have retained trivial names for example, pepsin, and trypsin.
- There are no coenzymes for these types of enzymes.
- Hydrolases are widely present in the gastrointestinal tract (pepsin, trypsin, lipase, amylase, and others) and lysosome.
- These enzymes carry out various functions such as the decomposition of macromolecules to their monomers.
- 3.1. esters;
- 3.2. O-glycosides;
- 3.3. ethers;
- 3.4. peptides;
- 3.5. non-peptide nitrogen-carbon bonds;
- 3.6. acid anhydrides;
- 3.7. carbon-carbon bonds;
- 3.8. bonds involving halogen;
- 3.9. phosphorus-nitrogen bonds;
- 3.10. sulfur-nitrogen bonds;
- 3.11. carbon-phosphorus bonds;
- 3.12. sulfur-sulfur bonds;
- 3.13. carbon-sulfur bonds.
- Proteases and peptidases – hydrolysis of proteins and peptides.
- Nucleases – hydrolysis of nucleic acids.
- Esterases – hydrolysis of ester bonds.
- Lipases – hydrolysis of neutral fats (triacylglycerols).
- Phosphatases – cleavage of phosphoric acid from substances.
- Glycosidases – hydrolyze O- and S-glycosidic bonds.
- Lyases are enzymes that catalyze the breaking of C-O, C-C, CN, and other bonds, as well as reversible reactions of cleavage of various groups in a non-hydrolytic way.
- There are 7 subclasses.
- These reactions are accompanied by the formation of a double bond or the addition of groups to the site of the double bond.
- Lyases are complex enzymes.
- Coenzymes are pyridoxal phosphate, thiamine diphosphate, magnesium, and cobalt are involved.
- Enzymes are divided into subclasses depending on the nature of the bond being attacked.
- Examples are enzymes that act on carbon-carbon bonds, carbon-oxygen bonds, and carbon-nitrogen bonds.
- 4.1. carbon-carbon lyases;
- 4.2. carbon-oxygen lyases;
- 4.3. carbon-nitrogen lyases;
- 4.4. carbon-sulfur lyases;
- 4.5. carbon-halogen lyase;
- 4.6. phosphorus-oxygen lyase;
- 4.7. carbon-phosphorus lyase.
- Carbon-Carbon Lyases: Pyruvate decarboxylase, Phosphoenolpyruvate carboxylase, Oxaloacetate decarboxylase, Glutamate decarboxylase, Lysine decarboxylase, Histidine decarboxylase, RUBISCO, etc.
- Carbon-Oxygen Lyases: Fumarase, Enolase (Alpha), aconitase, Tryptophan synthase, nitrile hydratase, etc.
- Carbon-Nitrogen Lyases: Ammonia-Lyases, Serine dehydratase, Amidine-Lyases, Adenylosuccinate lyase, etc.
- Carbon-Sulphur Lyases: Cystathionine gamma-lyase, Cystathionine-beta-lyase, Leukotriene C4 synthase, etc.
- Carbon-Halide Lyases: Dichloromethane dehalogenase, Halohydrin dehalogenase etc.
- Phosphorus-Oxygen Lyases: guanylate cyclase, adenylate cyclase, etc.
- Isomerases are enzymes that catalyze isomeric transformations within a single molecule.
- Isomerases are complex enzymes.
- Their coenzymes include pyridoxal phosphate, deoxyadenosylcobalamin, glutathione, monosaccharide phosphates (glucose-1,6-diphosphate), etc.
- Subclasses of isomerases are distinguished depending on the type of reaction.
- For example, Racemases are responsible for interconversions of L- and D-isomers, and S- and R-isomers.
- Epimerases change their configuration at one of the chiral carbon atoms, for example, interconversion of α- and β-isomers, transformations of ribulose into xylulose, galactose into glucose, and mannose into galactose.
- Mutases (transfer of chemical groups inside molecules, for example, phosphoglucomutase converts glucose-1-phosphate to glucose-6-phosphate).
- Some examples of isomerases include glucoisomarase, triose phosphate isomerase, bisphosphoglycerate mutase, photoisomerase, etc
- Ligases are enzymes that catalyze the attachment of two molecules to each other using the energy of high-energy ATP bonds (or other macros).
- Ligases are complex enzymes.
- They contain nucleotide (UTP), biotin (vitamin H), and folic coenzymes. There are 6 subclasses.
- An example of subclasses are groups of enzymes according to the type of bond formed: carbon-oxygen (C-O), carbon-sulfur (C-S), carbon-nitrogen (C-N), and carbon-carbon (C-C).
- 6.1. carbon-oxygen;
- 6.2. carbon-sulfur;
- 6.3. carbon-nitrogen;
- 6.4. carbon-carbon;
- 6.5. phosphorus-oxygen;
- 6.6. nitrogen metal.